J3_8ZGY_003

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

8ZGY|1|LA|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZGY_003 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.1007

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75408.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8ZGY|1|LA|C|185
8ZGY|1|LA|U|186
8ZGY|1|LA|A|187
8ZGY|1|LA|U|188
8ZGY|1|LA|G|189
*
8ZGY|1|LA|C|205
8ZGY|1|LA|G|206
8ZGY|1|LA|U|207
8ZGY|1|LA|C|208
8ZGY|1|LA|A|209
8ZGY|1|LA|U|210
8ZGY|1|LA|A|211
8ZGY|1|LA|G|212
8ZGY|1|LA|A|213
8ZGY|1|LA|G|214
*
8ZGY|1|LA|C|226
8ZGY|1|LA|G|227
8ZGY|1|LA|U|228
8ZGY|1|LA|G|229
8ZGY|1|LA|U|230
8ZGY|1|LA|G|231

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A