J3_8ZGY_005
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZGY_005 not in the Motif Atlas
- Geometric match to J3_8CRE_005
- Geometric discrepancy: 0.0721
- The information below is about J3_8CRE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
8ZGY|1|LA|A|369
8ZGY|1|LA|U|370
8ZGY|1|LA|G|371
8ZGY|1|LA|A|372
8ZGY|1|LA|A|373
8ZGY|1|LA|A|374
8ZGY|1|LA|A|375
8ZGY|1|LA|G|376
*
8ZGY|1|LA|C|403
8ZGY|1|LA|G|404
*
8ZGY|1|LC|C|19
8ZGY|1|LC|U|20
Current chains
- Chain LA
- 25S rRNA (3393-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain La
- Large ribosomal subunit protein uL24A
- Chain Ln
- Large ribosomal subunit protein eL39
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