J3_8ZGY_012

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8ZGY|1|LA|A|1481, 8ZGY|1|LA|U|1483

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZGY_012 not in the Motif Atlas

Homologous match to J3_8CRE_013

Geometric discrepancy: 0.1527

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8ZGY|1|LA|U|1478
8ZGY|1|LA|G|1479
8ZGY|1|LA|A|1480
8ZGY|1|LA|A|1481
8ZGY|1|LA|G|1482
8ZGY|1|LA|U|1483
8ZGY|1|LA|G|1484
*
8ZGY|1|LA|C|1856
8ZGY|1|LA|A|1857
8ZGY|1|LA|A|1858
*
8ZGY|1|LA|U|1870
8ZGY|1|LA|C|1871
8ZGY|1|LA|U|1872
8ZGY|1|LA|A|1873

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain Li

Large ribosomal subunit protein eL34A