J3_8ZGY_025

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

8ZGY|1|LB|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZGY_025 not in the Motif Atlas

Homologous match to J3_8P9A_066

Geometric discrepancy: 0.0732

The information below is about J3_8P9A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8ZGY|1|LB|C|9
8ZGY|1|LB|C|10
8ZGY|1|LB|A|11
8ZGY|1|LB|U|12
8ZGY|1|LB|A|13
8ZGY|1|LB|U|14
*
8ZGY|1|LB|A|66
8ZGY|1|LB|G|67
*
8ZGY|1|LB|U|111
8ZGY|1|LB|G|112

Current chains

Chain LB

5S rRNA (121-MER)

Nearby chains

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LG

Large ribosomal subunit protein uL18

Chain LL

Large ribosomal subunit protein uL16

Chain LV

Large ribosomal subunit protein eL21A