J3_8ZGY_040
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 8ZGY|1|S2|U|1413, 8ZGY|1|S2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZGY_040 not in the Motif Atlas
- Geometric match to J3_8CRE_084
- Geometric discrepancy: 0.2176
- The information below is about J3_8CRE_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8ZGY|1|S2|A|1336
8ZGY|1|S2|A|1337
8ZGY|1|S2|C|1338
*
8ZGY|1|S2|G|1386
8ZGY|1|S2|G|1387
8ZGY|1|S2|A|1388
8ZGY|1|S2|C|1389
*
8ZGY|1|S2|G|1412
8ZGY|1|S2|U|1413
8ZGY|1|S2|U|1414
8ZGY|1|S2|U|1415
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SO
- Small ribosomal subunit protein RACK1
Coloring options: