J3_8ZH3_013

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8ZH3|1|LA|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZH3_013 not in the Motif Atlas

Homologous match to J3_8CRE_013

Geometric discrepancy: 0.17

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8ZH3|1|LA|U|1479
8ZH3|1|LA|G|1480
8ZH3|1|LA|A|1481
8ZH3|1|LA|A|1482
8ZH3|1|LA|G|1483
8ZH3|1|LA|U|1484
8ZH3|1|LA|G|1485
*
8ZH3|1|LA|C|1857
8ZH3|1|LA|A|1858
8ZH3|1|LA|A|1859
*
8ZH3|1|LA|U|1871
8ZH3|1|LA|C|1872
8ZH3|1|LA|U|1873
8ZH3|1|LA|A|1874

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain Li

Large ribosomal subunit protein eL34A