J3_8ZHC_012

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8ZHC|1|LA|A|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8ZHC_012 not in the Motif Atlas

Homologous match to J3_8CRE_013

Geometric discrepancy: 0.1563

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8ZHC|1|LA|U|1478
8ZHC|1|LA|G|1479
8ZHC|1|LA|A|1480
8ZHC|1|LA|A|1481
8ZHC|1|LA|G|1482
8ZHC|1|LA|U|1483
8ZHC|1|LA|G|1484
*
8ZHC|1|LA|C|1856
8ZHC|1|LA|A|1857
8ZHC|1|LA|A|1858
*
8ZHC|1|LA|U|1870
8ZHC|1|LA|C|1871
8ZHC|1|LA|U|1872
8ZHC|1|LA|A|1873

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain Li

Large ribosomal subunit protein eL34A