J3_8ZHC_033
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8ZHC|1|S2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZHC_033 not in the Motif Atlas
- Geometric match to J3_8P9A_074
- Geometric discrepancy: 0.0873
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8ZHC|1|S2|A|881
8ZHC|1|S2|U|882
8ZHC|1|S2|C|883
8ZHC|1|S2|A|884
*
8ZHC|1|S2|U|928
8ZHC|1|S2|A|929
8ZHC|1|S2|A|930
8ZHC|1|S2|C|931
8ZHC|1|S2|U|932
8ZHC|1|S2|A|933
8ZHC|1|S2|C|934
8ZHC|1|S2|U|935
8ZHC|1|S2|G|936
*
8ZHC|1|S2|C|943
8ZHC|1|S2|A|944
8ZHC|1|S2|U|945
8ZHC|1|S2|U|946
8ZHC|1|S2|U|947
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain Lr
- Large ribosomal subunit protein eL43A
- Chain SQ
- Small ribosomal subunit protein eS1A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Se
- Small ribosomal subunit protein eS26B
Coloring options: