J3_9AZN_033
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9AZN|1|S3|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9AZN_033 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1082
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9AZN|1|S3|A|938
9AZN|1|S3|U|939
9AZN|1|S3|U|940
9AZN|1|S3|C|941
*
9AZN|1|S3|G|985
9AZN|1|S3|G|986
9AZN|1|S3|A|987
9AZN|1|S3|C|988
9AZN|1|S3|C|989
9AZN|1|S3|A|990
9AZN|1|S3|G|991
9AZN|1|S3|A|992
9AZN|1|S3|G|993
*
9AZN|1|S3|C|1000
9AZN|1|S3|A|1001
9AZN|1|S3|U|1002
9AZN|1|S3|U|1003
9AZN|1|S3|U|1004
Current chains
- Chain S3
- 18S rRNA
Nearby chains
- Chain Lp
- 60S ribosomal protein L37a
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- Small ribosomal subunit protein uS11
- Chain Sa
- 40S ribosomal protein S26
Coloring options: