J3_9B11_023
3D structure
- PDB id
- 9B11 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human unrotated hibernating without CCDC124 state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9B11|1|L5|A|4464, 9B11|1|L5|U|4465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B11_023 not in the Motif Atlas
- Homologous match to J3_8P9A_063
- Geometric discrepancy: 0.0701
- The information below is about J3_8P9A_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9B11|1|L5|U|4463
9B11|1|L5|A|4464
9B11|1|L5|U|4465
9B11|1|L5|C|4466
*
9B11|1|L5|G|4491
9B11|1|L5|U|4492
9B11|1|L5|U|4493
*
9B11|1|L5|A|4507
9B11|1|L5|C|4508
9B11|1|L5|U|4509
9B11|1|L5|A|4510
9B11|1|L5|A|4511
9B11|1|L5|U|4512
9B11|1|L5|A|4513
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LV
- 60S ribosomal protein L23
Coloring options: