3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CACUG*CGUGAUGG*CGAG
Length
17 nucleotides
Bulged bases
9B11|1|S2|U|1535, 9B11|1|S2|G|1603
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9B11_042 not in the Motif Atlas
Homologous match to J3_8CRE_086
Geometric discrepancy: 0.1348
The information below is about J3_8CRE_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_03192.1
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
Number of instances in this motif group
5

Unit IDs

9B11|1|S2|C|1532
9B11|1|S2|A|1533
9B11|1|S2|C|1534
9B11|1|S2|U|1535
9B11|1|S2|G|1536
*
9B11|1|S2|C|1597
9B11|1|S2|G|1598
9B11|1|S2|U|1599
9B11|1|S2|G|1600
9B11|1|S2|A|1601
9B11|1|S2|U|1602
9B11|1|S2|G|1603
9B11|1|S2|G|1604
*
9B11|1|S2|C|1635
9B11|1|S2|G|1636
9B11|1|S2|A|1637
9B11|1|S2|G|1638

Current chains

Chain S2
18S rRNA

Nearby chains

Chain Et
Transfer RNA; tRNA
Chain SF
40S ribosomal protein S5
Chain SS
40S ribosomal protein S18
Chain ST
40S ribosomal protein S19
Chain SZ
Small ribosomal subunit protein eS25

Coloring options:


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