J3_9B24_014
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 9B24|1|Y|U|31, 9B24|1|Y|U|536, 9B24|1|Y|U|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B24_014 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2551
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9B24|1|Y|C|29
9B24|1|Y|U|30
9B24|1|Y|U|31
9B24|1|Y|G|32
*
9B24|1|Y|C|533
9B24|1|Y|G|534
9B24|1|Y|A|535
9B24|1|Y|U|536
9B24|1|Y|A|537
9B24|1|Y|G|538
9B24|1|Y|C|539
9B24|1|Y|G|540
9B24|1|Y|G|541
9B24|1|Y|A|542
9B24|1|Y|U|543
9B24|1|Y|U|544
9B24|1|Y|A|545
9B24|1|Y|G|546
9B24|1|Y|U|547
9B24|1|Y|A|548
9B24|1|Y|C|549
*
9B24|1|Y|G|556
9B24|1|Y|G|557
9B24|1|Y|A|558
9B24|1|Y|A|559
9B24|1|Y|U|560
9B24|1|Y|G|561
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain b
- Large ribosomal subunit protein uL4
- Chain m
- Large ribosomal subunit protein bL20
- Chain p
- Large ribosomal subunit protein uL23
- Chain z
- Large ribosomal subunit protein bL34
Coloring options: