J3_9B24_019

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9B24|1|Y|A|1827, 9B24|1|Y|A|1828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B24_019 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1416

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9B24|1|Y|C|1421
9B24|1|Y|A|1422
9B24|1|Y|A|1423
9B24|1|Y|G|1424
*
9B24|1|Y|C|1823
9B24|1|Y|C|1824
9B24|1|Y|C|1825
9B24|1|Y|A|1826
9B24|1|Y|A|1827
9B24|1|Y|A|1828
9B24|1|Y|C|1829
*
9B24|1|Y|G|1838
9B24|1|Y|U|1839
9B24|1|Y|G|1840

Current chains

Chain Y

23S rRNA

Nearby chains

Chain z

Large ribosomal subunit protein bL34