3D structure

PDB id
9B50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
9B50|1|AA|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9B50_016 not in the Motif Atlas
Geometric match to J3_8B0X_031
Geometric discrepancy: 0.086
The information below is about J3_8B0X_031
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_40706.1
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

9B50|1|AA|U|1116
9B50|1|AA|A|1117
9B50|1|AA|U|1118
*
9B50|1|AA|A|1155
9B50|1|AA|G|1156
9B50|1|AA|A|1157
9B50|1|AA|C|1158
9B50|1|AA|U|1159
9B50|1|AA|G|1160
9B50|1|AA|C|1161
*
9B50|1|AA|G|1175
9B50|1|AA|A|1176
9B50|1|AA|G|1177
9B50|1|AA|G|1178
9B50|1|AA|A|1179
9B50|1|AA|A|1180
9B50|1|AA|G|1181
9B50|1|AA|G|1182
9B50|1|AA|U|1183
9B50|1|AA|G|1184

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
30S ribosomal protein S2
Chain AG
30S ribosomal protein S7
Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AN
30S ribosomal protein S14

Coloring options:


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