J3_9BH5_002
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9BH5|1|A5|A|872, 9BH5|1|A5|G|979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_002 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0593
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BH5|1|A5|U|869
9BH5|1|A5|G|870
9BH5|1|A5|A|871
9BH5|1|A5|A|872
9BH5|1|A5|C|873
9BH5|1|A5|U|874
9BH5|1|A5|A|875
*
9BH5|1|A5|U|960
9BH5|1|A5|A|961
9BH5|1|A5|G|962
*
9BH5|1|A5|C|978
9BH5|1|A5|G|979
9BH5|1|A5|A|980
9BH5|1|A5|A|981
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CA
- Large ribosomal subunit protein uL2
- Chain CN
- Large ribosomal subunit protein eL15
- Chain Cj
- Ribosomal protein L37
- Chain Cl
- Large ribosomal subunit protein eL39
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