J3_9BH5_005
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GAAG*CGAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9BH5|1|A5|U|1933, 9BH5|1|A5|A|1934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_005 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.2613
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BH5|1|A5|G|1553
9BH5|1|A5|A|1554
9BH5|1|A5|A|1555
9BH5|1|A5|G|1556
*
9BH5|1|A5|C|1930
9BH5|1|A5|G|1931
9BH5|1|A5|A|1932
9BH5|1|A5|U|1933
9BH5|1|A5|A|1934
9BH5|1|A5|U|1935
9BH5|1|A5|C|1936
*
9BH5|1|A5|G|1945
9BH5|1|A5|U|1946
9BH5|1|A5|C|1947
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain Cg
- Large ribosomal subunit protein eL34
- Chain Cj
- Ribosomal protein L37
- Chain Cl
- Large ribosomal subunit protein eL39
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