J3_9BH5_007
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9BH5|1|A5|A|2815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_007 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.0847
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BH5|1|A5|C|2776
9BH5|1|A5|U|2777
9BH5|1|A5|C|2778
*
9BH5|1|A5|G|2802
9BH5|1|A5|A|2803
9BH5|1|A5|G|2804
*
9BH5|1|A5|C|2813
9BH5|1|A5|A|2814
9BH5|1|A5|A|2815
9BH5|1|A5|A|2816
9BH5|1|A5|A|2817
9BH5|1|A5|G|2818
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A7
- 5S ribosomal RNA; 5S rRNA
- Chain CD
- Large ribosomal subunit protein uL18
- Chain CJ
- Large ribosomal subunit protein uL5B
- Chain CT
- Large ribosomal subunit protein eL21
- Chain DA
- Transfer RNA; tRNA
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