J3_9BH5_012

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BH5_012 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.0847

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9BH5|1|B2|C|1120
9BH5|1|B2|A|1121
9BH5|1|B2|A|1122
9BH5|1|B2|G|1123
*
9BH5|1|B2|C|1537
9BH5|1|B2|U|1538
9BH5|1|B2|A|1539
9BH5|1|B2|G|1540
9BH5|1|B2|U|1541
9BH5|1|B2|A|1542
9BH5|1|B2|A|1543
*
9BH5|1|B2|U|1565
9BH5|1|B2|G|1566
9BH5|1|B2|A|1567
9BH5|1|B2|U|1568
9BH5|1|B2|U|1569
9BH5|1|B2|A|1570
9BH5|1|B2|C|1571
9BH5|1|B2|G|1572

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein uS7

Chain AQ

Small ribosomal subunit protein uS9

Chain Ac

Small ribosomal subunit protein eS28