J3_9BH5_013
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_013 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0618
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BH5|1|B2|U|1127
9BH5|1|B2|G|1128
9BH5|1|B2|G|1129
9BH5|1|B2|A|1130
*
9BH5|1|B2|U|1424
9BH5|1|B2|A|1425
9BH5|1|B2|C|1426
*
9BH5|1|B2|G|1530
9BH5|1|B2|G|1531
9BH5|1|B2|A|1532
9BH5|1|B2|A|1533
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AF
- Small ribosomal subunit protein uS7
- Chain AQ
- Small ribosomal subunit protein uS9
- Chain AS
- Small ribosomal subunit protein uS13
- Chain AT
- Small ribosomal subunit protein eS19
- Chain DA
- Transfer RNA; tRNA
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