J3_9BH5_015
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CCGGAC*GGUUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 9BH5|1|B2|G|1176, 9BH5|1|B2|G|1401
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_015 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1215
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9BH5|1|B2|C|1174
9BH5|1|B2|C|1175
9BH5|1|B2|G|1176
9BH5|1|B2|G|1177
9BH5|1|B2|A|1178
9BH5|1|B2|C|1179
*
9BH5|1|B2|G|1222
9BH5|1|B2|G|1223
9BH5|1|B2|U|1224
9BH5|1|B2|U|1225
9BH5|1|B2|G|1226
*
9BH5|1|B2|U|1398
9BH5|1|B2|U|1399
9BH5|1|B2|A|1400
9BH5|1|B2|G|1401
9BH5|1|B2|A|1402
9BH5|1|B2|U|1403
9BH5|1|B2|G|1404
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AK
- Plectin/S10 N-terminal domain-containing protein
- Chain Ad
- Small ribosomal subunit protein uS14
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