J3_9BH5_025
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_025 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.0695
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9BH5|1|A5|U|1591
9BH5|1|A5|C|1592
9BH5|1|A5|G|1593
9BH5|1|A5|A|1594
9BH5|1|A5|U|1595
9BH5|1|A5|C|1596
*
9BH5|1|A5|G|1667
9BH5|1|A5|G|1668
9BH5|1|A5|A|1669
9BH5|1|A5|A|1670
9BH5|1|A5|U|1671
*
9BH5|1|A5|A|1688
9BH5|1|A5|A|1689
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CX
- Large ribosomal subunit protein uL23B
- Chain Cg
- Large ribosomal subunit protein eL34
- Chain Ck
- Large ribosomal subunit protein eL38
- Chain Cl
- Large ribosomal subunit protein eL39
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