J3_9BH5_032
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AC*GUUACUU*AAAUU
- Length
- 14 nucleotides
- Bulged bases
- 9BH5|1|A8|U|60, 9BH5|1|A8|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_032 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.2454
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
9BH5|1|A8|A|44
9BH5|1|A8|C|45
*
9BH5|1|A8|G|58
9BH5|1|A8|U|59
9BH5|1|A8|U|60
9BH5|1|A8|A|61
9BH5|1|A8|C|62
9BH5|1|A8|U|63
9BH5|1|A8|U|64
*
9BH5|1|A8|A|94
9BH5|1|A8|A|95
9BH5|1|A8|A|96
9BH5|1|A8|U|97
9BH5|1|A8|U|98
Current chains
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain CX
- Large ribosomal subunit protein uL23B
- Chain Ch
- Large ribosomal subunit protein uL29
- Chain Cj
- Ribosomal protein L37
- Chain Cl
- Large ribosomal subunit protein eL39
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