J3_9BUP_004
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUGAAAUAG*CC*GU
- Length
- 13 nucleotides
- Bulged bases
- 9BUP|1|AA|U|383
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_004 not in the Motif Atlas
- Homologous match to J3_8CRE_005
- Geometric discrepancy: 0.0949
- The information below is about J3_8CRE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
9BUP|1|AA|A|377
9BUP|1|AA|U|378
9BUP|1|AA|G|379
9BUP|1|AA|A|380
9BUP|1|AA|A|381
9BUP|1|AA|A|382
9BUP|1|AA|U|383
9BUP|1|AA|A|384
9BUP|1|AA|G|385
*
9BUP|1|AA|C|413
9BUP|1|AA|C|414
*
9BUP|1|AC|G|23
9BUP|1|AC|U|24
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L4
- Chain AW
- 60S ribosomal protein L17
- Chain AZ
- 60S ribosomal protein L26
- Chain Ae
- 60S ribosomal protein L39
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