J3_9BUP_031
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUC*GAACAACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9BUP|1|SA|C|1003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_031 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.0884
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|SA|A|950
9BUP|1|SA|U|951
9BUP|1|SA|U|952
9BUP|1|SA|C|953
*
9BUP|1|SA|G|997
9BUP|1|SA|A|998
9BUP|1|SA|A|999
9BUP|1|SA|C|1000
9BUP|1|SA|A|1001
9BUP|1|SA|A|1002
9BUP|1|SA|C|1003
9BUP|1|SA|U|1004
9BUP|1|SA|G|1005
*
9BUP|1|SA|C|1012
9BUP|1|SA|A|1013
9BUP|1|SA|U|1014
9BUP|1|SA|U|1015
9BUP|1|SA|U|1016
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L2
- Chain Ah
- Large ribosomal subunit protein eL43
- Chain S3
- 40S ribosomal protein S26
- Chain SB
- 40S ribosomal protein S3a
- Chain SP
- 40S ribosomal protein S11
- Chain SU
- 40S ribosomal protein S15
Coloring options: