J3_9BUP_041
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9BUP|1|SA|U|1719
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_041 not in the Motif Atlas
- Homologous match to J3_8P9A_084
- Geometric discrepancy: 0.3611
- The information below is about J3_8P9A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|C|1716
9BUP|1|SA|A|1717
9BUP|1|SA|C|1718
9BUP|1|SA|U|1719
9BUP|1|SA|G|1720
*
9BUP|1|SA|C|1830
9BUP|1|SA|G|1831
9BUP|1|SA|U|1832
9BUP|1|SA|G|1833
9BUP|1|SA|A|1834
9BUP|1|SA|U|1835
9BUP|1|SA|G|1836
9BUP|1|SA|G|1837
*
9BUP|1|SA|C|1868
9BUP|1|SA|G|1869
9BUP|1|SA|A|1870
9BUP|1|SA|G|1871
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S2
- 40S ribosomal protein S25
- Chain S7
- Transfer RNA; tRNA
- Chain SI
- 40S ribosomal protein S5
- Chain SS
- 40S ribosomal protein S18
- Chain SY
- 40S ribosomal protein S19
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