J3_9C3H_009
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9C3H|1|L5|A2M|1534, 9C3H|1|L5|G|1641, 9C3H|1|L5|A|1642
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9C3H_009 not in the Motif Atlas
- Homologous match to J3_8P9A_049
- Geometric discrepancy: 0.054
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9C3H|1|L5|U|1531
9C3H|1|L5|G|1532
9C3H|1|L5|A|1533
9C3H|1|L5|A2M|1534
9C3H|1|L5|C|1535
9C3H|1|L5|PSU|1536
9C3H|1|L5|A|1537
*
9C3H|1|L5|U|1622
9C3H|1|L5|A|1623
9C3H|1|L5|G|1624
*
9C3H|1|L5|C|1640
9C3H|1|L5|G|1641
9C3H|1|L5|A|1642
9C3H|1|L5|A|1643
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2
- Chain LN
- Large ribosomal subunit protein eL15
- Chain LP
- Large ribosomal subunit protein eL37
- Chain LU
- Large ribosomal subunit protein eL39
Coloring options: