J3_9C3H_012

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9C3H|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9C3H_012 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.1677

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9C3H|1|L5|C|2393
9C3H|1|L5|G|2394
9C3H|1|L5|A|2395
9C3H|1|L5|A|2396
9C3H|1|L5|G|2397
9C3H|1|L5|U|2398
9C3H|1|L5|G|2399
*
9C3H|1|L5|C|2805
9C3H|1|L5|A|2806
9C3H|1|L5|A|2807
*
9C3H|1|L5|U|2819
9C3H|1|L5|C|2820
9C3H|1|L5|U|2821
9C3H|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain Lg

Large ribosomal subunit protein eL34