J3_9C3H_013

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

9C3H|1|L5|U|2788, 9C3H|1|L5|A|2789

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9C3H_013 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.0832

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9C3H|1|L5|G|2402
9C3H|1|L5|A|2403
9C3H|1|L5|A|2404
9C3H|1|L5|G|2405
*
9C3H|1|L5|C|2785
9C3H|1|L5|C|2786
9C3H|1|L5|A2M|2787
9C3H|1|L5|U|2788
9C3H|1|L5|A|2789
9C3H|1|L5|U|2790
9C3H|1|L5|C|2791
*
9C3H|1|L5|G|2800
9C3H|1|L5|U|2801
9C3H|1|L5|C|2802

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein eL37

Chain LU

Large ribosomal subunit protein eL39

Chain Lg

Large ribosomal subunit protein eL34