J3_9C3H_017

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9C3H_017 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2728

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9C3H|1|L5|U|2575
9C3H|1|L5|G|2576
*
9C3H|1|L5|C|2585
9C3H|1|L5|G|2586
9C3H|1|L5|A|2587
9C3H|1|L5|C|2588
9C3H|1|L5|C|2589
*
9C3H|1|L5|G|2756
9C3H|1|L5|A|2757

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

Large ribosomal subunit protein eL27

Chain Lg

Large ribosomal subunit protein eL34