J3_9CPA_005
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9CPA|1|2|G|987
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9CPA_005 not in the Motif Atlas
- Geometric match to J3_8P9A_074
- Geometric discrepancy: 0.1289
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9CPA|1|2|A|934
9CPA|1|2|U|935
9CPA|1|2|U|936
9CPA|1|2|C|937
*
9CPA|1|2|G|981
9CPA|1|2|G|982
9CPA|1|2|A|983
9CPA|1|2|C|984
9CPA|1|2|C|985
9CPA|1|2|A|986
9CPA|1|2|G|987
9CPA|1|2|A|988
9CPA|1|2|G|989
*
9CPA|1|2|C|996
9CPA|1|2|A|997
9CPA|1|2|U|998
9CPA|1|2|U|999
9CPA|1|2|U|1000
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 0
- Small ribosomal subunit protein uS11
- Chain P
- Ribosomal protein S13
- Chain b
- 40S ribosomal protein S26
- Chain k
- Eukaryotic translation initiation factor 3 subunit C
- Chain x
- Small ribosomal subunit protein eS1
Coloring options: