J3_9CPA_007
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- 9CPA|1|2|C|1641
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9CPA_007 not in the Motif Atlas
- Geometric match to J3_8P9A_076
- Geometric discrepancy: 0.1551
- The information below is about J3_8P9A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9CPA|1|2|C|1214
9CPA|1|2|C|1215
9CPA|1|2|A|1216
9CPA|1|2|G|1217
*
9CPA|1|2|C|1640
9CPA|1|2|C|1641
9CPA|1|2|A|1642
9CPA|1|2|G|1643
9CPA|1|2|U|1644
9CPA|1|2|A|1645
9CPA|1|2|A|1646
*
9CPA|1|2|U|1668
9CPA|1|2|G|1669
9CPA|1|2|A|1670
9CPA|1|2|U|1671
9CPA|1|2|U|1672
9CPA|1|2|A|1673
9CPA|1|2|A|1674
9CPA|1|2|G|1675
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain H
- Small ribosomal subunit protein uS7
- Chain S
- uS9
- Chain d
- Ribosomal protein S28
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