J3_9CPA_015
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9CPA|1|2|U|1530, 9CPA|1|2|G|1598
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9CPA_015 not in the Motif Atlas
- Geometric match to J3_8CRE_086
- Geometric discrepancy: 0.1723
- The information below is about J3_8CRE_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
9CPA|1|2|C|1527
9CPA|1|2|A|1528
9CPA|1|2|C|1529
9CPA|1|2|U|1530
9CPA|1|2|G|1531
*
9CPA|1|2|C|1592
9CPA|1|2|G|1593
9CPA|1|2|U|1594
9CPA|1|2|G|1595
9CPA|1|2|A|1596
9CPA|1|2|U|1597
9CPA|1|2|G|1598
9CPA|1|2|G|1599
*
9CPA|1|2|C|1630
9CPA|1|2|G|1631
9CPA|1|2|A|1632
9CPA|1|2|G|1633
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS7
- Chain U
- uS13
- Chain V
- eS19
- Chain n
- eS25
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