J3_9D89_002

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

9D89|1|D|A|504, 9D89|1|D|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D89_002 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0935

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9D89|1|D|G|30
9D89|1|D|C|31
*
9D89|1|D|G|474
9D89|1|D|C|475
9D89|1|D|G|476
9D89|1|D|A|477
9D89|1|D|A|478
9D89|1|D|A|479
9D89|1|D|A|480
9D89|1|D|G|481
9D89|1|D|A|482
9D89|1|D|A|483
9D89|1|D|C|484
*
9D89|1|D|G|496
9D89|1|D|A|497
9D89|1|D|G|498
9D89|1|D|U|499
9D89|1|D|G|500
9D89|1|D|A|501
9D89|1|D|A|502
9D89|1|D|A|503
9D89|1|D|A|504
9D89|1|D|A|505
9D89|1|D|G|506
9D89|1|D|A|507
9D89|1|D|A|508
9D89|1|D|C|509
9D89|1|D|C|510

Current chains

Chain D

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain r

50S ribosomal protein L22

Chain t

Large ribosomal subunit protein uL24