J3_9D89_008

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9D89|1|D|A|1304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D89_008 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0984

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9D89|1|D|C|1300
9D89|1|D|G|1301
9D89|1|D|G|1302
9D89|1|D|A|1303
9D89|1|D|A|1304
9D89|1|D|G|1305
*
9D89|1|D|C|1627
9D89|1|D|A|1628
9D89|1|D|G|1629
*
9D89|1|D|C|1641
9D89|1|D|A|1642
9D89|1|D|A|1643
9D89|1|D|G|1644

Current chains

Chain D

23S rRNA

Nearby chains