J3_9D89_011
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9D89_011 not in the Motif Atlas
- Homologous match to J3_5J7L_069
- Geometric discrepancy: 0.0392
- The information below is about J3_5J7L_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9D89|1|D|G|1426
9D89|1|D|G|1427
9D89|1|D|G|1428
9D89|1|D|A|1429
9D89|1|D|C|1430
9D89|1|D|G|1431
*
9D89|1|D|C|1566
9D89|1|D|C|1567
*
9D89|1|D|G|1570
9D89|1|D|A|1571
9D89|1|D|A|1572
9D89|1|D|A|1573
9D89|1|D|A|1574
9D89|1|D|G|1575
9D89|1|D|C|1576
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L2
Coloring options: