J3_9DFE_060

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9DFE|1|2a|U|871, 9DFE|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFE_060 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0621

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9DFE|1|2a|C|826
9DFE|1|2a|U|827
9DFE|1|2a|A|828
9DFE|1|2a|G|829
*
9DFE|1|2a|C|857
9DFE|1|2a|G|858
9DFE|1|2a|A|859
9DFE|1|2a|A|860
9DFE|1|2a|G|861
*
9DFE|1|2a|C|868
9DFE|1|2a|G|869
9DFE|1|2a|U|870
9DFE|1|2a|U|871
9DFE|1|2a|A|872
9DFE|1|2a|A|873
9DFE|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8