J3_9DOV_033
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 9DOV|1|B5|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DOV|1|B5|C|1037
9DOV|1|B5|U|1038
9DOV|1|B5|A|1039
*
9DOV|1|B5|U|1079
9DOV|1|B5|U|1080
9DOV|1|B5|A|1081
9DOV|1|B5|C|1082
9DOV|1|B5|G|1083
*
9DOV|1|B5|C|1090
9DOV|1|B5|A|1091
9DOV|1|B5|A|1092
9DOV|1|B5|A|1093
9DOV|1|B5|G|1094
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BA
- 40S ribosomal protein S0-A
- Chain BV
- 40S ribosomal protein S21-A
- Chain BW
- Small ribosomal subunit protein uS8A
- Chain Ba
- Small ribosomal subunit protein eS26B
- Chain Bb
- 40S ribosomal protein S27-A
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