J3_9E0N_002
3D structure
- PDB id
- 9E0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis unmethylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 9E0N|1|A|U|31, 9E0N|1|A|U|536, 9E0N|1|A|U|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0N_002 not in the Motif Atlas
- Geometric match to J3_4V9F_013
- Geometric discrepancy: 0.1267
- The information below is about J3_4V9F_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
9E0N|1|A|C|29
9E0N|1|A|U|30
9E0N|1|A|U|31
9E0N|1|A|G|32
*
9E0N|1|A|C|533
9E0N|1|A|G|534
9E0N|1|A|A|535
9E0N|1|A|U|536
9E0N|1|A|A|537
9E0N|1|A|G|538
9E0N|1|A|C|539
9E0N|1|A|G|540
9E0N|1|A|G|541
9E0N|1|A|A|542
9E0N|1|A|U|543
9E0N|1|A|U|544
9E0N|1|A|A|545
9E0N|1|A|G|546
9E0N|1|A|U|547
9E0N|1|A|A|548
9E0N|1|A|C|549
*
9E0N|1|A|G|556
9E0N|1|A|G|557
9E0N|1|A|A|558
9E0N|1|A|A|559
9E0N|1|A|U|560
9E0N|1|A|G|561
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL34
- Chain E
- Large ribosomal subunit protein uL4
- Chain R
- Large ribosomal subunit protein bL20
- Chain U
- Large ribosomal subunit protein uL23
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