J3_9E0P_012

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9E0P|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E0P_012 not in the Motif Atlas

Geometric match to J3_7A0S_007

Geometric discrepancy: 0.128

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9E0P|1|A|C|1421
9E0P|1|A|A|1422
9E0P|1|A|A|1423
9E0P|1|A|G|1424
*
9E0P|1|A|C|1823
9E0P|1|A|C|1824
9E0P|1|A|C|1825
9E0P|1|A|A|1826
9E0P|1|A|A|1827
9E0P|1|A|A|1828
9E0P|1|A|C|1829
*
9E0P|1|A|G|1838
9E0P|1|A|U|1839
9E0P|1|A|G|1840

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL34