J3_9E0P_019
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9E0P|1|A|A|2742, 9E0P|1|A|U|2743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0P_019 not in the Motif Atlas
- Geometric match to J3_7A0S_011
- Geometric discrepancy: 0.1979
- The information below is about J3_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9E0P|1|A|C|2741
9E0P|1|A|A|2742
9E0P|1|A|U|2743
9E0P|1|A|C|2744
*
9E0P|1|A|G|2769
9E0P|1|A|U|2770
9E0P|1|A|U|2771
*
9E0P|1|A|A|2785
9E0P|1|A|U|2786
9E0P|1|A|U|2787
9E0P|1|A|A|2788
9E0P|1|A|A|2789
9E0P|1|A|A|2790
9E0P|1|A|G|2791
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain L
- Large ribosomal subunit protein uL14
Coloring options: