J3_9E0P_024
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- UGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 9E0P|1|a|A|633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0P_024 not in the Motif Atlas
- Geometric match to J3_5J7L_051
- Geometric discrepancy: 0.2645
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9E0P|1|a|U|566
9E0P|1|a|G|567
9E0P|1|a|G|568
*
9E0P|1|a|C|631
9E0P|1|a|U|632
9E0P|1|a|A|633
9E0P|1|a|G|634
9E0P|1|a|A|635
*
9E0P|1|a|U|731
9E0P|1|a|G|732
9E0P|1|a|A|733
9E0P|1|a|C|734
9E0P|1|a|G|735
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- Small ribosomal subunit protein uS8
- Chain l
- Small ribosomal subunit protein uS12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- Small ribosomal subunit protein uS17
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