3D structure

PDB id
9E0P (explore in PDB, NAKB, or RNA 3D Hub)
Description
M. smegmatis methylated 70S ribosome structure
Experimental method
ELECTRON MICROSCOPY
Resolution
3.17 Å

Loop

Sequence
UGG*CUAGA*UGACG
Length
13 nucleotides
Bulged bases
9E0P|1|a|A|633
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9E0P_024 not in the Motif Atlas
Geometric match to J3_5J7L_051
Geometric discrepancy: 0.2645
The information below is about J3_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

9E0P|1|a|U|566
9E0P|1|a|G|567
9E0P|1|a|G|568
*
9E0P|1|a|C|631
9E0P|1|a|U|632
9E0P|1|a|A|633
9E0P|1|a|G|634
9E0P|1|a|A|635
*
9E0P|1|a|U|731
9E0P|1|a|G|732
9E0P|1|a|A|733
9E0P|1|a|C|734
9E0P|1|a|G|735

Current chains

Chain a
16S rRNA

Nearby chains

Chain h
Small ribosomal subunit protein uS8
Chain l
Small ribosomal subunit protein uS12
Chain o
Small ribosomal subunit protein uS15
Chain q
Small ribosomal subunit protein uS17

Coloring options:


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