J3_9E0P_025
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- UG*CACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 9E0P|1|a|U|703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0P_025 not in the Motif Atlas
- Geometric match to J3_4LFB_012
- Geometric discrepancy: 0.2392
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74074.1
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9E0P|1|a|U|652
9E0P|1|a|G|653
*
9E0P|1|a|C|697
9E0P|1|a|A|698
9E0P|1|a|C|699
9E0P|1|a|C|700
9E0P|1|a|G|701
9E0P|1|a|G|702
9E0P|1|a|U|703
9E0P|1|a|G|704
9E0P|1|a|G|705
*
9E0P|1|a|C|712
9E0P|1|a|G|713
9E0P|1|a|G|714
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain b
- Small ribosomal subunit protein uS2
- Chain f
- Small ribosomal subunit protein bS6
- Chain k
- Small ribosomal subunit protein uS11
- Chain r
- Small ribosomal subunit protein bS18B
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