J3_9E16_034
3D structure
- PDB id
- 9E16 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9E16|1|a|U|1175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E16_034 not in the Motif Atlas
- Homologous match to J3_8B0X_031
- Geometric discrepancy: 0.1596
- The information below is about J3_8B0X_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9E16|1|a|U|1107
9E16|1|a|G|1108
9E16|1|a|U|1109
*
9E16|1|a|A|1147
9E16|1|a|G|1148
9E16|1|a|A|1149
9E16|1|a|C|1150
9E16|1|a|U|1151
9E16|1|a|G|1152
9E16|1|a|C|1153
*
9E16|1|a|G|1167
9E16|1|a|A|1168
9E16|1|a|G|1169
9E16|1|a|G|1170
9E16|1|a|A|1171
9E16|1|a|A|1172
9E16|1|a|G|1173
9E16|1|a|G|1174
9E16|1|a|U|1175
9E16|1|a|G|1176
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 9
- 30S ribosomal protein S14 C-
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
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