J3_9F58_007
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAUG*CGUCAUAGAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 9F58|1|a|U|210
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F58_007 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.0895
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97456.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9F58|1|a|C|185
9F58|1|a|U|186
9F58|1|a|A|187
9F58|1|a|U|188
9F58|1|a|G|189
*
9F58|1|a|C|205
9F58|1|a|G|206
9F58|1|a|U|207
9F58|1|a|C|208
9F58|1|a|A|209
9F58|1|a|U|210
9F58|1|a|A|211
9F58|1|a|G|212
9F58|1|a|A|213
9F58|1|a|G|214
*
9F58|1|a|C|226
9F58|1|a|G|227
9F58|1|a|U|228
9F58|1|a|G|229
9F58|1|a|U|230
9F58|1|a|G|231
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L4-A
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain J
- 60S ribosomal protein L26-A
Coloring options: