J3_9F58_014

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

9F58|1|a|A|1482, 9F58|1|a|U|1484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F58_014 not in the Motif Atlas

Homologous match to J3_8CRE_013

Geometric discrepancy: 0.1318

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

9F58|1|a|U|1479
9F58|1|a|G|1480
9F58|1|a|A|1481
9F58|1|a|A|1482
9F58|1|a|G|1483
9F58|1|a|U|1484
9F58|1|a|G|1485
*
9F58|1|a|C|1857
9F58|1|a|A|1858
9F58|1|a|A|1859
*
9F58|1|a|U|1871
9F58|1|a|C|1872
9F58|1|a|U|1873
9F58|1|a|A|1874

Current chains

Chain a

25S rRNA

Nearby chains

Chain S

60S ribosomal protein L34-A

Chain s

60S ribosomal protein L19-A