J3_9F58_023
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9F58|1|a|A|2887, 9F58|1|a|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F58_023 not in the Motif Atlas
- Homologous match to J3_8P9A_063
- Geometric discrepancy: 0.0659
- The information below is about J3_8P9A_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9F58|1|a|U|2886
9F58|1|a|A|2887
9F58|1|a|U|2888
9F58|1|a|C|2889
*
9F58|1|a|G|2914
9F58|1|a|U|2915
9F58|1|a|U|2916
*
9F58|1|a|A|2930
9F58|1|a|C|2931
9F58|1|a|U|2932
9F58|1|a|A|2933
9F58|1|a|A|2934
9F58|1|a|U|2935
9F58|1|a|A|2936
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain d
- 60S ribosomal protein L3
- Chain p
- 60S ribosomal protein L16-A
- Chain w
- 60S ribosomal protein L23-A
Coloring options: