J3_9F9S_023
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9F9S|1|L1|A|2887, 9F9S|1|L1|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_023 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.0507
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|L1|U|2886
9F9S|1|L1|A|2887
9F9S|1|L1|U|2888
9F9S|1|L1|C|2889
*
9F9S|1|L1|G|2914
9F9S|1|L1|U|2915
9F9S|1|L1|U|2916
*
9F9S|1|L1|A|2930
9F9S|1|L1|C|2931
9F9S|1|L1|U|2932
9F9S|1|L1|A|2933
9F9S|1|L1|A|2934
9F9S|1|L1|U|2935
9F9S|1|L1|A|2936
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LJ
- 60S ribosomal protein L16-A
- Chain La
- 60S ribosomal protein L23-A
- Chain Lx
- 60S ribosomal protein L3
Coloring options: