J3_9F9S_043

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9F9S_043 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1349

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9F9S|1|M1|C|1631
9F9S|1|M1|A|1632
*
9F9S|1|M1|U|1641
9F9S|1|M1|A|1642
9F9S|1|M1|A|1643
9F9S|1|M1|C|1644
9F9S|1|M1|U|1645
*
9F9S|1|M1|A|1810
9F9S|1|M1|G|1811

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Mg

60S ribosomal protein L38

Chain Mk

60S ribosomal protein L34-A

Chain Mr

60S ribosomal protein L27-A