J3_9F9S_046
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 9F9S|1|M1|G|2549, 9F9S|1|M1|U|2550, 9F9S|1|M1|U|2551, 9F9S|1|M1|A|2554, 9F9S|1|M1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_046 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.1115
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|M1|A|2529
9F9S|1|M1|G|2530
9F9S|1|M1|C|2531
9F9S|1|M1|U|2532
*
9F9S|1|M1|A|2547
9F9S|1|M1|C|2548
9F9S|1|M1|G|2549
9F9S|1|M1|U|2550
9F9S|1|M1|U|2551
9F9S|1|M1|C|2552
9F9S|1|M1|U|2553
9F9S|1|M1|A|2554
9F9S|1|M1|G|2555
9F9S|1|M1|C|2556
9F9S|1|M1|A|2557
9F9S|1|M1|U|2558
9F9S|1|M1|U|2559
9F9S|1|M1|C|2560
9F9S|1|M1|A|2561
9F9S|1|M1|A|2562
9F9S|1|M1|G|2563
*
9F9S|1|M1|U|2578
9F9S|1|M1|G|2579
9F9S|1|M1|A|2580
9F9S|1|M1|U|2581
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MC
- 60S ribosomal protein L8-A
- Chain Mb
- 60S ribosomal protein L43-A
- Chain Mk
- 60S ribosomal protein L34-A
- Chain Mo
- 60S ribosomal protein L30
- Chain Mr
- 60S ribosomal protein L27-A
- Chain Mt
- 60S ribosomal protein L25
- Chain Mw
- 60S ribosomal protein L2-A
- Chain Rb
- 40S ribosomal protein S1-A
Coloring options: