J3_9F9S_060
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9F9S|1|R1|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F9S_060 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.194
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|R1|A|881
9F9S|1|R1|U|882
9F9S|1|R1|C|883
9F9S|1|R1|A|884
*
9F9S|1|R1|U|928
9F9S|1|R1|A|929
9F9S|1|R1|A|930
9F9S|1|R1|C|931
9F9S|1|R1|U|932
9F9S|1|R1|A|933
9F9S|1|R1|C|934
9F9S|1|R1|U|935
9F9S|1|R1|G|936
*
9F9S|1|R1|C|943
9F9S|1|R1|A|944
9F9S|1|R1|U|945
9F9S|1|R1|U|946
9F9S|1|R1|U|947
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain Mb
- 60S ribosomal protein L43-A
- Chain RA
- Small ribosomal subunit protein eS26A
- Chain Rb
- 40S ribosomal protein S1-A
- Chain Rn
- 40S ribosomal protein S13
- Chain Ro
- 40S ribosomal protein S14-B
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